Blueberry Lemon Cheesecake Cupcakes

by Julie Ruble on June 18, 2009 · 18 comments

Cream cheese can make anything amazing, in my opinion.  Bagels, frosting, a root canal… I’m betting that cream cheese could even fix the economy.  So when Mike and I were at the grocery store awhile back and saw blueberry cream cheese muffins, we had to try them.  They were good, but not as delicious as they should’ve been — not homemade delicious, and not cupcake delicious.  I thought I’d try my hand at my own version — blueberry cream cheese cupcakes, with some lemon added in for good measure.

These cupcakes are fresh, creamy, and sweet.  They are especially delightful straight from the icebox — that’s right, the icebox, because their cool and refreshing taste reminds me of the William Carlos Williams poem:

This Is Just To Say
by William Carlos Williams

I have eaten
the plums

that were in
the icebox

and which
you were probably
for breakfast

Forgive me
they were delicious
so sweet
and so cold

Blueberry Lemon Cheesecake Cupcakes

Recipe By: Compiled and adapted by me, from:

-Gloria Bradley (cupcakes, adapted)
-Joy of Baking (cheesecake filling)
-Mom (buttercream, slightly adapted)

Yields: 12-15 cupcakes

Cupcake Ingredients:
1.5 cups (about 6 3/4 ounces) plus 2 tablespoons all-purpose flour, divided
3/4 cup granulated sugar
1.5 teaspoons baking powder
1/4 teaspoon salt
1/8 teaspoon baking soda
1/4 cup butter, melted
1 large egg
1/2 cup buttermilk
1/2 cup milk
1/2 teaspoon vanilla
2 teaspoons lemon juice
3/4 cup fresh or frozen blueberries, thawed

Cheesecake Filling Ingredients:
8 ounces (227 grams) cream cheese, room temperature
1/3 cup (65 grams) granulated white sugar
1 large egg
1/2 teaspoon pure vanilla extract

Lemon Buttercream Frosting Ingredients:
1/2 cup crisco (white) shortening
1/2 cup butter, softened
4 cups confectioner’s sugar
1/2 teaspoon pure vanilla extract (can use clear if you want the frosting to be snow white)
1/2 teaspoon imitation almond flavoring
1/2 teaspoon imitation butter flavoring
1 tablespoon lemon juice
lemon zest, if desired
2-4 tablespoons sweet milk for thinning
4-5 drops yellow food coloring


Cream Cheese Filling: In your electric mixer, or with a hand mixer, beat the cream cheese until smooth. Add the sugar, egg, and vanilla extract and beat until creamy and smooth. Set aside while you make the cupcake batter.

Blueberry Lemon Cupcakes: Preheat oven to 350°. Place 12 decorative paper muffin cup liners into muffin cups. To prepare cupcakes, lightly spoon 1.5 cups flour into dry measuring cups; level with a knife. Measure 1 tablespoon flour; level with a knife. Sift together 1.5 cups flour plus 1 tablespoon flour, granulated sugar, baking powder, 1/4 teaspoon salt, and baking soda in a large bowl. Combine melted butter and egg in another large bowl; stir with a whisk. Add buttermilk, milk, vanilla, and lemon juice to butter mixture; stir with a whisk. Add buttermilk mixture to flour mixture, stirring just until moist. Toss blueberries with remaining 1 tablespoon flour. Fold blueberries into batter. Spoon batter into prepared muffin cups. Spoon a couple tablespoons of the cream cheese filling in the center of each cupcake. Bake at 350° for 25 minutes or until a wooden pick inserted in center of the cupcake part comes out clean. Cool in pan 5 minutes on a wire rack; remove from pan. Cool completely on wire rack.

Fresh out of the Oven!
Fresh out of the oven!

Lemon Buttercream frosting: Finally, make the buttercream frosting. Cream all ingredients except food coloring together. Can add more sweet milk if needed. Add food coloring and mix. Frost completely cool cupcakes, using a pastry bag if available. I used star tip 1M.

Frosted top!
All frosted!

NOTE: I wanted to make both these and the strawberry cupcakes in the above post together out of the same basic recipe. If you’d like to do this, double the recipe shown here. Make the batter as described, except omit the lemon juice. Before folding in the berries, separate the batter into two bowls. Add the lemon juice and floured blueberries to one bowl, and fold floured strawberries into the other. Bake as described. I didn’t use the cream cheese filling with the strawberry cupcakes because I wanted to fill them with jam, but you could if you wanted.

These cupcakes were so yummy — and as I mentioned above, even better after being refrigerated overnight in an airtight container. They are a little sweet in places — you might want to cut down the sugar in the cupcakes a bit if you’re not big on lots of sweetness. If you wanted the cheesecake filling to be a more pronounced part of the cupcake, you could use the filling and top with some streusel instead of frosting. Another nice thing to try would be simply piping sweetened cream cheese into the middle of the cupcakes post-baking.

Enjoy! Hope these cupcakes inspire poetry in you!

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{ 15 comments… read them below or add one }

Vivian June 18, 2009 at 11:22 pm

YUM! I heard about the Red Velvet Whoopie Pies… I am so sorry my diet prevents me from trying one right now! Life is not fair! I am sure they will taste great! It must be torture for poor Byrd to smell these and not be able to taste… :(


Willow Bird Baking June 18, 2009 at 11:58 pm

Oh, she’s all right! I gave her a bit of a Vienna Sausage the other day as a treat. She gobbled it up!


Dena June 21, 2009 at 1:22 am

Yum, yum & more yum. ; ]


Heidi Namva August 6, 2009 at 11:23 pm


Love your website! I’m not sure how I ended up on it but I’m glad I found it. These lemon blueberry cupcakes love lovely and your swirl of yellow icing looks perfect. I will have to tune in regularly because I also am a big fan of cupcakes. In fact, I just purchased a whole bunch of new cupcake liners on the new website Check them out, they have lots of fun things.



Julie August 6, 2009 at 11:27 pm

Thank you, Heidi! I just popped over to your blog as well and it looks delicious! I love your square muffin tin — I want one!! Will have to check out I especially love fancy cupcake liners, but have never taken the plunge and bought any. Might have to fix that :)

Hope you enjoy poking around!


red118a November 23, 2010 at 12:40 pm

Doh!! Im on a diet right now. BOOKMARKED!! great blog!


Julie @ Willow Bird Baking November 23, 2010 at 2:14 pm

Thank you :)


Nicki April 25, 2011 at 1:08 pm

I made these for our Easter dinne but left off the lemon frosting and used cool whip (less mess/sugar for the 2-year-old). But I wish I’d realized the cupcake itself wouldn’t be very lemon-y without the frosting. I would have increased the lemon juice or added lemon zest/peel to amp up the lemon flavor. Hubby loved the cupcake/cheescake combo though.


Julie @ Willow Bird Baking April 25, 2011 at 1:13 pm

Oh, good to note, Nicki! The lemon flavor of the cupcake is subtle. You can also use lemon extract if you want more bang for your buck. Glad you guys enjoyed them!


Toria June 28, 2011 at 9:57 pm

I really love this recipe! Only problem is, I’ve been making cupcakes pretty frequently for a while now.. do you think this recipe would be big enough for two round, 9″ cake pans? Or should I alter it a bit?


Julie @ Willow Bird Baking June 28, 2011 at 10:52 pm

Hi Toria! I’m honestly not sure how it will work! Maybe this chart will help:

Let me know how it goes if you try it!


Patricia June 16, 2013 at 6:05 pm


You stated that these were very sweet. “They are a little sweet in places — you might want to cut down the sugar in the cupcakes a bit if you’re not big on lots of sweetness.” How much sugar would you recommend to omit from these to make them less sweet? Thanks.



Julie Ruble June 16, 2013 at 7:14 pm

I’d try taking the cupcakes down to 1/2 cup and putting only 2-3 tablespoons sugar in the cheesecake filling. Let me know what you think!


Patricia June 17, 2013 at 5:53 am

Thanks for getting back to me. I cut the sugar back almost exactly as you suggested and they turned out good. My husband ate one and said they were delicious. He is not much for sweets, that is why I wanted to cut the sugar back on these. I am glad I did, he absolutely loves them. The icing was amazing, my first homemade recipe I’ve made. Thanks for sharing this recipe and responding. Can’t wait to try another one of your recipes!


Julie Ruble June 17, 2013 at 2:38 pm

I’m so glad to hear that, Patricia!


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